Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs201171926 chr3:169327245 ATT/A 5.07E-7 177 13.37 11 3.73 KM Plot
ESCA rs201239978 chr10:38299843 GC/TC 0 184 12.93 16.97 0.3 KM Plot
ESCA rs201480305 chr12:123760465 AAAG/A 5.52E-8 183 13.03 20.35 2.7 KM Plot
ESCA rs201623830 chr6:170115687 CA/C 5.63E-8 180 12.93 22 1.57 KM Plot
ESCA rs2070255 chr22:19165478 A/G 9.2E-5 180 13.4 13.03 2.7 KM Plot
ESCA rs2117333 chr8:103565479 C/T 9.26E-7 181 13.37 13.45 3.83 KM Plot
ESCA rs2142983 chr6:146069701 G/C 9.05E-5 183 10.1 13.4 13.57 KM Plot
ESCA rs2268092 chr12:13721172 A/T 1.6E-5 184 13.37 13.33 4.27 KM Plot
ESCA rs2328708 chr6:146095739 G/A 2.64E-5 184 9.77 13.5 13.57 KM Plot
ESCA rs237725 chr20:47937999 A/G 3.13E-6 176 12.82 15.9 6 KM Plot
ESCA rs237726 chr20:47938335 A/T 1.7E-6 179 12.83 16 6 KM Plot
ESCA rs237727 chr20:47938630 A/G 1.7E-6 179 12.83 16 6 KM Plot
ESCA rs2379189 chr1:247169147 T/C 1.71E-7 176 3.87 20.3 13.03 KM Plot
ESCA rs2642957 chr1:247166104 A/G 1.64E-7 177 3.87 18.5 13.03 KM Plot
ESCA rs2642974 chr1:247160270 C/T 1.66E-7 177 3.87 18.5 13.03 KM Plot